Highly sampled single subject
Hi, I would like to estimate how a variable impacts rsFC in a single subject who underwent 80 consecutive rsfMRI scans (MyConnectome dataset) is there a way to have access to the functionality of conn...
View ArticleIncluded network citations
Dear All, I have been looking for citations for the appropriate papers to include in a write-up for an analysis utilising some of the resting-state networks included in CONN. I remember in a previous...
View Articledefault preprocessing pipeline CONN toolbox
Dear all, Dear Alfonso, I am using the default preprocessing pipeline in CONN toobox for my analyses, with some modifications, I choosed: -realignment and unwrap -slice-timing correction...
View ArticleWhat is the difference about ROI?
Dear CONN experts I am investigating function connectivity of language domain and language network. The results of IFG and language netowork (IFG) seem to be different, but what is the definition of...
View ArticleRE: gPPI in block and event-related designs.
[color=#000000]bump -[/color] I'm still unclear on whether or not I need to include the 'control' condition explicitly in the gPPI analysis or if it is appropriate to select only 'drug', and lump...
View ArticleRE: Second condition not visible
[color=#000000]Dear Heidi[/color] [color=#000000]That is quite strange, could you please send me your conn_*.mat file to take a quick look to see if I can figure this out? In the meantime just a quick...
View ArticleRE: How to get 6 motion parameters
[color=#000000]Dear Kim,[/color] [color=#000000]Those individual values (6 timeseries containing the three translation and three rotation parameters over time for each subject and session) are listed...
View Articleconditions: .mat overwritten or averaged?
Hi all, I'm having a problem with specifying my conditions. I have three conditions (placebo, condition 1, condition 2), and (in most cases) three sessions (A, B, and C) - so far, the matching is easy;...
View ArticleCrash in Denoising:Updating Analysis variable
Hi,all, I have downloaded the newest version of CONN(17f), but it still comes out that: "Not ready to process step conn_process_9". Maltab is 12b, and spm 12. Is the version of matlab too old? Help...
View ArticleMultiple ROIs Native Space
Dear Experts, I am trying to run a native space ROI-to-ROI analysis. I am adding masks with several indexes (1 to 89, INT16 NIfTI file, ZERO as background) for each volunteer (individual segmentation...
View ArticleBatch Job: SLURM
Hi, I'm having difficulty getting a batch job to properly submit to our SLURM cluster. Conn is submitting batch jobs to SLURM. (It appears as if it is submitting two per test, for some reason.) The...
View Article2nd Level Multi-Session Result Interpretation
[color=#000000]Hi Nicole,[/color] The contrast [1 -1 1 -1 0 0 0 0 0 0 0 0] (selecting 2-back_Ba, 0-back_Ba, 2-Back_Da, and 0-Back_Da in this contrast) is looking at the differences in connectivity...
View ArticleRE: Matlab 2015a error when starting CONN 15g
Have you solved the problem? I'm having the same issue when starting the conn17.
View ArticleImporting ROI Data
Hi I have been trying to setup an analysis, but I keep getting an error saying Empty grey-matter mask in subject 1, despite having specified a grey matter mask for all subjects. Could anyone perhaps...
View Articleplotting results
Hi all, I have a 2x2 design and get significant results for my ROIs. However, I can't be sure whether the group (controls, smokers) or the condition is driving it. Is there a way to plot the results as...
View ArticleMultiple ROIs issue
Dear Experts, I am again here regarding the multiple ROIs inclusion. I did this several times before, but now, even adding the CONN Atlas files (which is automatically added to new projects) I can't...
View ArticleJob manager Background process, test fails
Hi, trying to run multiple single-processor background jobs on a local machine I am using conn 17.f , but I got the same error with conn 17.c) using the default Background process (Unix, Mac) when I...
View ArticleRE: conditions: .mat overwritten or averaged?
[color=#000000]Hi Charlotte,[/color] [color=#000000]That looks perfectly fine. If for that individual subject the 'placebo' condition was associated with two functional runs/sessions, then CONN will...
View Articledefault preprocessing pipeline CONN toolbox
[color=#000000]Dear Image Neuro[/color] [color=#000000]The 'realign and unwarp' method implements the removal of dynamic EPI distortions (movement-by-susceptibility interactions) as described in...
View ArticleError in Pre-processing Step
Dear Expert I am using Conn-17f for FMRI data analysis of patients and controls. I am using default preprocessing pipeline for the data. After this preprocessing step when i press done to start the...
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