Interaction between batch mode and the GUI
Hello, I am a new user of Conn. I'd like to use both the batch and GUI modes. I'd like to know if there is a way to convert a selection of parameters made in the GUI into batch commands. From what I...
View ArticleRE: Importing ICA components to Conn
Hi Alfonso Thank you! I am trying to implement your advice and the following issues appeared: 1. Do mean loading ICA mean component maps simply as ROI and not through the option "Add ICA-Network ROI"...
View ArticleRE: whole brain voxel2voxel connectivity matrix?
[color=#000000]Hi Eran&Pravesh,[/color] [color=#000000]This is a good suggestion but keep in mind that when using 2mm^3 voxels/ROIs you are going to end up with something on the order of 160000...
View Articleraw time series before band pass filtering
Dear Alfonso, Is there a way to access the raw fmri time series before any denoising/band-pass filtering steps have occurred? Thanks Peter
View ArticleRE: Second level Cluster explorer
If i open my project in Conn16b the labels are fine. This may just be a bug in the new version.
View ArticleProblem with missing data
My datas has some missing data and in experimental conditions, I have checked (Allow missing data). ERROR DESCRIPTION: Error using conn_setup_preproc (line 766) Functional data not yet defined for...
View ArticleRE: Batching second level error
[color=#000000]Hi Marlene,[/color] [color=#000000]Yes, that looks perhaps just a typo in the scripts, I do not see your attachment could you please resend?[/color] [color=#000000]Alfonso[/color]...
View Articleonsets for conditions
I have removed the first 3 files from preprocessing (dummy scans without task data). However, I notice that the files remain in the functional tab. When inputting the onsets for the conditions, do I...
View ArticleRE: Conn17a Networks
Dear Alfonso It would be very helpful to get some more information on how the networks were created that are implemented in CONN. Is there a published reference for study including in the 497 subjects...
View ArticleRE: Seed-to-voxel within ROI analysis
[color=#000000]Hi Isabel,[/color] [color=#000000]If I am interpreting correctly, the simplest way to do that would be to perform standard seed-to-voxel analyses (between your seed and every voxel in...
View ArticleRE: Interaction between batch mode and the GUI
[color=#000000]Hi Lline,[/color] [color=#000000]Yes, the CONN gui simply reflects the status of your current CONN project, so any changes that you affect in the GUI, or any batch commands that you run,...
View ArticleCONN 17 Batch dynamic FC
Hi CONN experts, I read that batch functionality for dynamic FC was added in CONN 17, but I can't find a description anywhere on how to code it. Do I simply add this into my batch script?<span...
View ArticleRE: including a parametric modulator
Hi Alfonso, many thanks for this info. I had a follow up question about the parametric modulator analysis. In my spm.mat file I have two event-related conditions A and B, each of which has a trialwise...
View ArticleRE: Changing segmentation input in the gui
Thanks Alfonso, In case others are having trouble with this option in GUI with 17a, the solution is here: http://www.nitrc.org/forum/message.php?msg_id=19676
View ArticleIncorrect TR
Hello CONN experts, I have a small question: what happens if TR is incorrectly entered when doing Basic Setup? After running all the analyses, I found out that I entered the TR value incorrectly, but...
View ArticleMVPA association with a continuous variable
Hi everyone, a very quick question. In the FAQ it is said about the multivariate index of connectivity that "Each of these measures can be used to explore whole-brain connectivity differences among...
View Articleconn 17a - atlas cluster
Dear conn-community, does anybody know what the atlas cluster (e.g. atlas.cluster059) in Conn 17.a mean? Since I have updated Conn to 17.a they appear as ROIs in the first and second level analysis and...
View ArticleRE: Second level Cluster explorer
When posting that screenshot I had used the standalone version of 17a. However I have tried using 17a from within matlab with it being the only toolbox on the path other than matlab's default targets...
View ArticleRE: Dynamic FC Analysis - Error Msg in Conn17a
Bump! I've received the same error message and am wondering if anyone has a suggested solution..
View ArticleInterpretation of direction of contrast
Dear Conn experts, I am running gPPI analysis on an event related design. I have a question regarding the interpretation of second level results. I am pretty sure this question must have already been...
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