RE: Pending jobs after SGE processing
Hi Alfonso thank you very much for following up, and sorry for the late reply! This was some weeks back, so I hope I remember correctly. Also, my understanding of SGE is rather pedestrian (I'm a...
View ArticleRE: Visualizing results from a pre-generated thresholded T-map
I don't think CONN is very good for this. Here are some alternative viewers I can recommend: MRIcroGL https://www.mccauslandcenter.sc.edu/mricrogl/ SurfIce https://www.nitrc.org/projects/surfice/...
View ArticleError message at preprocessing stage
Dear Alfonso and everyone, When I click "preprocessing" I get the following error message: [b]Error using uiwait (line 48)[/b] [b]Input argument must be of type figure[/b] [b]Error in...
View Articlenii or nii.gz?
Hi all, Just a quick question. Does CONN accept nii format, or do I have to convert my data into nii.gz before I can preprocess them?
View ArticleDenoising mismatched dimensions error
I am trying to denoise a single subject's data but I am running into errors. The subject was scanned for 5 separate sessions, and in each session, multiple functional scans were taken (either 3 or 4...
View ArticlePOST > PRE : zscored difference or difference of zscores?
Dear Conn developpers, First, I would like to thank you for your tool that has been very helpful for my connectivity analyses. I have a little question regarding the use of z-scores for POST vs PRE...
View Article"Create confound-corrected time series" does not work?
Hello everybody. I am trying to create global signal regressed fmri time series. I asked about this in a previous post (link: https://www.nitrc.org/forum/forum.php?thread_id=10055&forum_id=1144 )...
View ArticleRE: Extract data / import values from ICA results
Can anyone give me a hint regarding this question? I am still struggling with the interpretation of these values. Thank you very much Best Felix [i]Originally posted by Felix Müller:[/i][quote]Dear...
View ArticleRE: Using CONN preprocessed and denoised data to do ICA in GIFT
Same issue, have you found the solutions yet?? Thanks in advance!
View ArticleRE: Error message in slice viewer
Hey Moises!! Did you, by any chance, find out the origin of this error? I have got the same problem..... cheers Till
View Articleadding values in second level covairates
Hi Conn experts, I am new to conn toolbox, I am trying to add the values in 'covariants second level' under 'setup' section. I have 5-6 variables like age, gender, level of disorganisation, etc. I need...
View ArticleDOF for first-level analysis
Dear Conn experts, I work with single-subject analysis and I have a question about resultsROI_Subject00*_Condition00* matrix. This matrix contains a field "DOF" (degrees of freedom). The problem is...
View ArticleScalar covariate
First, I admit that this may be a basic or silly question. Second, I did search the forum to see if this had already been asked; my apologies if I missed it. We have two sets of subjects -- males and...
View ArticleRE: Single Subject Pre/Post Analysis Options?
Dear Stephen, Thanks a lot for sharing the scripts. I'm a bit puzzles though about how to interpret the outcomes. If I understood correctly the scripts compare the BETA maps per source, between two...
View ArticleCan CONN use GPU to accelerate the processing time
Hi everyone, I'm wondering if CONN could use GPU CUDA cores to accelerate processing? Sincerely Salim
View Article2 x 2 analysis
Hello, We wanted to do a 2 x 2 seed to voxel analysis in conn and have the groups suicide, non-suicide, genotype1 and genotype2. To look at whether having genotype1 vs genotype2 has any effect on...
View ArticleRE: Error in set up
我看到你的名字是中文，所以我在这里用中文回复你哈，你如果看不懂的话可以回复我，我再给你用英文回复一次 这个问题我也遇到了，不知道你处理好没有 预处理之后的文件在conn里可视化成两个切片图，如果不是的话就会报错，简单来说就是你加载错了文件，要加载预处理之后的文件，有时间序列的那个图像
View ArticleSlice-timing correction "Reference Slice' error
Hi there, I'm new to spm/CONN and am having trouble with the slice-timing correction preprocessing step. I'm running 17 subjects (3 with 2 sessions). Slices were acquired in a interleaved (bottom-up)...
View ArticleGlobal efficiency threshold
Hello all, I am working under CONN18.b, I have 33 participants and I'm analyzing their resting state connectivity. In graph theory analyses: 1. Results look fine until I select only the 4 ROIs of the...
View Article