how to decide on the right Band-pass filter?
[color=#000000]Hello,[/color] [color=#000000] [/color] [color=#000000]I am working in CONNv17b to conduct functional connectivity analysis on resting state data. We acquired two resting scans (before...
View ArticleRE: mat2file not compiling
I am working with spm12 (eeg data) and getting the same error , how should i handle the same problem. thank you
View ArticleHow to add a session? for single group repeated measure design [baseline and...
Hi Alfonso, I have resting state for 1 group at 2 x assessment times, pre and post intervention. I am not sure how to add in the GUI, i.e., what to click, to add baseline and follow up data separately,...
View ArticleRE: conn crashed after lack of storage
Hi, If you don't mind me asking, how did you restore the project.mat file? I'm a new student trying to make this all work. THanks so much, Yush
View ArticleReporting statistics from ICC findings
Hi Alfonso and fellow CONN users, I have two questions regarding reporting statistics: 1. This may be a very simple question and I have just been looking in the wrong places. I am using a design...
View ArticleHow to skip preprocessing ?
Hello dear conn-ers: Thank you so much for developing this great toolbox ! I just have 2 quick questions, 1) To skip preprocessing, what structural and functional files should i choose in the set up in...
View ArticleRE: conn_dynexplore
Dear experts, I am wondering whether anyone has an answer to the conn_dynexplore error that I have posted earlier. Error using ==> conn_dynexplore at 105 The specified event is not supported by...
View ArticlePreprocessing (Denoising) Error
Hi all, I've been working to re-denoise an analyses for future dFC work. This is a CONN_x file that has been located to a different folder although path names in the conn_x structure have been updated...
View ArticleRE: Error at 1st level: incorrect # ROIs
Thanks so much for your detailed reply, Suzanne (I was not notified of a response - glad I checked back). I will re-run the analysis using an earlier version of conn, I'm thinking that will resolve...
View ArticleApplying FWE correction for ROI-to-ROI analyses in conn
Dear Alfonso, dear experts, apologies in advance for the probably naive question, but I was wondering if there is a way I could derive the p-FWE values (instead of the default p-FDR values) for the...
View ArticleROI List (components and labeling)
Hi, I am using the ROI List of the conn toolbox and I cannot figure out what the components DefaultModeNetwork.LP and Salience.RPFC (... prefrontal cortex?) stand for. I would really appreciate your...
View ArticleDEM FieldMap MEEG tools error
For all my subjects when I run Preprocessing: default preprocessing pipeline for volume-based analyses (direct normalization to NMNI space), then remove slice timing correction I get the following...
View ArticleError at Outlier detection (ART-based) preprocessing step
Hello everyone, First post for me on this forum. It's been very useful to read you all for quite some months now. Thanks to all of you. I'm running an event functional whole-brain analysis, that's been...
View ArticleWithin subject, multi-study design
Hello CONN experts! I am pooling together data from 3 studies. In 2 of the studies there is data from two time points, although not every subject has data from T1 and T2. In the third study, there is...
View ArticleCustom networks and subject specific stats
Hi Conn experts! i am running analysis of my resting state data and I want to use custom made ROI's but I need them to be treated as networks I have 19 ROI's for DMN (.nii files) and similar number for...
View ArticleHCP Denoising Error
Hello, I am processing data in CONN in a supercomputer. I have successfully set up parallel processing in the tool and all works well in the preprocessing step - with great performance. Once that is...
View Articledentate nucleus connectivity
hey alfonso, while following the default preprocessing pipeline in conn, i preprocessed my data for both healthy controls and patients taking the Dentate nucleus as a custom roi. in the second level...
View Articleexternal normalization
Dear Conn developers, First of all, thanks for this great tool! I am preprocessing a 200 subjects sample of resting. The standard normalization procedure in conn (direct normalization) left a...
View ArticleSPM website nor responding
Hello, The readme.txt of conn says that "This software requires SPM" followed by the website url. However, the url is not responding. Does anybody know what is happening? Is there anywhere else I can...
View Articlebatch scripting with user defined roi
Dear experts, My batch script was successfully done with all parts except the Analysis phase. It went in to trouble and gave me this error message: Cell contents reference from a non-cell array object....
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