[color=#000000]Dear Heidi,[/color]
[color=#000000]Sorry about that, I believe this error may indicate that you have an empty ROI. Typically this could indicate some problem during segmentation that could cause no suprathreshold gray, white, or CSF probability masks, although I believe that should have prompted an earlier error message so I am not exactly sure in this case. If in doubt please send me your conn*.mat file and I will take a quick look[/color]
[color=#000000]Hope this helps[/color]
[color=#000000]Alfonso[/color]
[i]Originally posted by Heidi Jacobs:[/i][quote]Dear Alfonso,
I copied the REX.m to the folder, and started conn again (took a while, since it contains over 200 scans).
Now I get this error message:
RROR DESCRIPTION:
Index exceeds matrix dimensions.
Error in rex>rex_do (line 764)
dall = spm_sample_vol(params.VF(i),allxyz1(1,:),allxyz1(2,:),allxyz1(3,:),0); %XYZ1{r}{nclusters}(1,:),XYZ1{r}{nclusters}(2,:),XYZ1{r}{nclusters}(3,:),0);
Error in rex (line 157)
[params.ROIdata,params.ROInames,params.ROIinfo.basis,params.ROIinfo.voxels,params.ROIinfo.files,params.ROIinfo.select,params.ROIinfo.trans]=rex_do(params,1);
Error in conn_rex (line 8)
[varargout{1:nargout}]=rex(varargin{:});
Error in conn_process (line 746)
[data{nroi1},namesroi{nroi},params]=conn_rex(Vsourcethis,Vmask{nroi}{min(nses,nsesstemp)},'summary_measure','eigenvariate','dims',CONN_x.Setup.rois.dimensions{nroi},'conjunction_mask',mask,'level',level,'scaling',scalinglevel,'select_clusters',0,'covariates',entercovariates,'fsanatomical',fsanatomical,'output_type',outputtype,'output_rex',filenamerex,'output_folder',filepath);
Error in conn_process (line 15)
case 'setup', disp(['CONN: RUNNING SETUP STEP']); conn_process([0:4,4.5,5]);
Error in conn (line 3195)
else conn_process('setup');
Error in conn_menumanager (line 119)
feval(CONN_MM.MENU{n0}.callback{n1}{1},CONN_MM.MENU{n0}.callback{n1}{2:end});
CONN v.17.a
SPM8 + Anatomy Beamforming DEM FieldMap MEEGtools dartel hdw marsbar vbm8 wfubpm wfupickatlas
Matlab v.2014b
storage: 241.6Gb available
Warning: Contents.m overloaded by version in folder /autofs/space/schopenhauer_002/users/MATLAB_Scripts/spm8/toolbox/vbm8
SUGGESTIONS:
Potential missing Setup information. Try revising Setup fields for potential missing information
Not sure what is missing? I think I checked everything?
Any thoughts
Heidi[/quote]
[color=#000000]Sorry about that, I believe this error may indicate that you have an empty ROI. Typically this could indicate some problem during segmentation that could cause no suprathreshold gray, white, or CSF probability masks, although I believe that should have prompted an earlier error message so I am not exactly sure in this case. If in doubt please send me your conn*.mat file and I will take a quick look[/color]
[color=#000000]Hope this helps[/color]
[color=#000000]Alfonso[/color]
[i]Originally posted by Heidi Jacobs:[/i][quote]Dear Alfonso,
I copied the REX.m to the folder, and started conn again (took a while, since it contains over 200 scans).
Now I get this error message:
RROR DESCRIPTION:
Index exceeds matrix dimensions.
Error in rex>rex_do (line 764)
dall = spm_sample_vol(params.VF(i),allxyz1(1,:),allxyz1(2,:),allxyz1(3,:),0); %XYZ1{r}{nclusters}(1,:),XYZ1{r}{nclusters}(2,:),XYZ1{r}{nclusters}(3,:),0);
Error in rex (line 157)
[params.ROIdata,params.ROInames,params.ROIinfo.basis,params.ROIinfo.voxels,params.ROIinfo.files,params.ROIinfo.select,params.ROIinfo.trans]=rex_do(params,1);
Error in conn_rex (line 8)
[varargout{1:nargout}]=rex(varargin{:});
Error in conn_process (line 746)
[data{nroi1},namesroi{nroi},params]=conn_rex(Vsourcethis,Vmask{nroi}{min(nses,nsesstemp)},'summary_measure','eigenvariate','dims',CONN_x.Setup.rois.dimensions{nroi},'conjunction_mask',mask,'level',level,'scaling',scalinglevel,'select_clusters',0,'covariates',entercovariates,'fsanatomical',fsanatomical,'output_type',outputtype,'output_rex',filenamerex,'output_folder',filepath);
Error in conn_process (line 15)
case 'setup', disp(['CONN: RUNNING SETUP STEP']); conn_process([0:4,4.5,5]);
Error in conn (line 3195)
else conn_process('setup');
Error in conn_menumanager (line 119)
feval(CONN_MM.MENU{n0}.callback{n1}{1},CONN_MM.MENU{n0}.callback{n1}{2:end});
CONN v.17.a
SPM8 + Anatomy Beamforming DEM FieldMap MEEGtools dartel hdw marsbar vbm8 wfubpm wfupickatlas
Matlab v.2014b
storage: 241.6Gb available
Warning: Contents.m overloaded by version in folder /autofs/space/schopenhauer_002/users/MATLAB_Scripts/spm8/toolbox/vbm8
SUGGESTIONS:
Potential missing Setup information. Try revising Setup fields for potential missing information
Not sure what is missing? I think I checked everything?
Any thoughts
Heidi[/quote]