Conn_batch.m typical terminal output

Hi! 

I just wanted to check whether or not this script was running correctly. I have used the conn_batch_humanconnectomeproject pre-made script here and set it up to run on our severs. It is now over the expected finish time and the terminal doesn't unfortunately provide much information.

I have gotten past the statistics for movement data and I believe now running the first level analysis but its been doing this for 5 days and hasn't showed any signs of it working correctly: 

The last terminal output saves the art_screenshot.jpg for the first participant in this batch: 
Saved file: /home/lawrence/MSc_student/fMRI_CONN/group2/111514/LR1/art_screenshot.jpg

Since then it hasn't displayed any response. top shows its still running using 6.4% of the memory and 0.3% of the cpu. 

What does a typical terminal output look like? 

Thanks for any help you can provide! 



All the best,
Lawrence  

Terminal output: 

(3).art.output_dir = /home/lawrence/MSc_student/fMRI_CONN/group2/115017/LR1
(4).art.P(1) = /home/lawrence/MSc_student/fMRI_CONN/group2/115825/LR1/rfMRI_REST1_LR_hp2000_clean.nii
(4).art.P(2) = /home/lawrence/MSc_student/fMRI_CONN/group2/115825/RL1/rfMRI_REST1_RL_hp2000_clean.nii
(4).art.P(3) = /home/lawrence/MSc_student/fMRI_CONN/group2/115825/LR2/rfMRI_REST2_LR_hp2000_clean.nii
(4).art.P(4) = /home/lawrence/MSc_student/fMRI_CONN/group2/115825/RL2/rfMRI_REST2_RL_hp2000_clean.nii
(4).art.M(1) = /home/lawrence/MSc_student/fMRI_CONN/group2/115825/LR1/Movement_Regressors.deg.txt
(4).art.M(2) = /home/lawrence/MSc_student/fMRI_CONN/group2/115825/RL1/Movement_Regressors.deg.txt
(4).art.M(3) = /home/lawrence/MSc_student/fMRI_CONN/group2/115825/LR2/Movement_Regressors.deg.txt
(4).art.M(4) = /home/lawrence/MSc_student/fMRI_CONN/group2/115825/RL2/Movement_Regressors.deg.txt
(4).art.global_threshold = 5
(4).art.motion_threshold = 0.9
(4).art.use_diff_motion = 1
(4).art.use_diff_global = 1
(4).art.use_norms = 1
(4).art.drop_flag = 0
(4).art.motion_file_type = 3
(4).art.output_dir = /home/lawrence/MSc_student/fMRI_CONN/group2/115825/LR1

Mapping files for session 1...: ...done
Calculating globals...: 1200/1200...done
Mapping files for session 2...: ...done
Calculating globals...: 1200/1200...done
Mapping files for session 3...: ...done
Calculating globals...: 1200/1200...done
Mapping files for session 4...: ...done
Calculating globals...: 1200/1200...done
Session 1 global statistics - mean: 10030.4441 stdv: 8.5243
Session 2 global statistics - mean: 10054.6986 stdv: 9.7028
Session 3 global statistics - mean: 10081.8647 stdv: 9.9657
Session 4 global statistics - mean: 10046.0072 stdv: 11.9552
Outlier detection: 0 identified outliers
Statistics of movement data:
x y z pitch roll yaw norm
mean 0.0411 0.0081 0.0169 0.0003 0.0003 0.0003 0.0827
stdv 0.0316 0.0078 0.0134 0.0003 0.0003 0.0002 0.0395
max 0.1992 0.1328 0.1331 0.0045 0.0027 0.0026 0.4226
Saving SPM regressor file /home/lawrence/MSc_student/fMRI_CONN/group2/111514/LR1/art_regression_outliers_rfMRI_REST1_LR_hp2000_clean.mat and /home/lawrence/MSc_student/fMRI_CONN/group2/111514/LR1/art_regression_outliers_and_movement_rfMRI_REST1_LR_hp2000_clean.mat
Saving SPM regressor file /home/lawrence/MSc_student/fMRI_CONN/group2/111514/RL1/art_regression_outliers_rfMRI_REST1_RL_hp2000_clean.mat and /home/lawrence/MSc_student/fMRI_CONN/group2/111514/RL1/art_regression_outliers_and_movement_rfMRI_REST1_RL_hp2000_clean.mat
Saving SPM regressor file /home/lawrence/MSc_student/fMRI_CONN/group2/111514/LR2/art_regression_outliers_rfMRI_REST2_LR_hp2000_clean.mat and /home/lawrence/MSc_student/fMRI_CONN/group2/111514/LR2/art_regression_outliers_and_movement_rfMRI_REST2_LR_hp2000_clean.mat
Saving SPM regressor file /home/lawrence/MSc_student/fMRI_CONN/group2/111514/RL2/art_regression_outliers_rfMRI_REST2_RL_hp2000_clean.mat and /home/lawrence/MSc_student/fMRI_CONN/group2/111514/RL2/art_regression_outliers_and_movement_rfMRI_REST2_RL_hp2000_clean.mat
New analysis mask file saved to /home/lawrence/MSc_student/fMRI_CONN/group2/111514/LR1/art_mask_rfMRI_REST1_LR_hp2000_clean.nii
New Voxel-wise mean file saved to /home/lawrence/MSc_student/fMRI_CONN/group2/111514/LR1/art_mean_rfMRI_REST1_LR_hp2000_clean.nii
Saved file: /home/lawrence/MSc_student/fMRI_CONN/group2/111514/LR1/art_screenshot.jpg