Hello,
I am attempting to integrate a harmonization step (to control for site effects). I preprocessed the files and ran it through our harmonization script. However, when these harmonized files are imported back into CONN, our scans are shifted relative to the MNI template. I have included an image of this issue. Is there a way to copy the image orientation properties of one file and apply it to another file through CONN?
I am attempting to integrate a harmonization step (to control for site effects). I preprocessed the files and ran it through our harmonization script. However, when these harmonized files are imported back into CONN, our scans are shifted relative to the MNI template. I have included an image of this issue. Is there a way to copy the image orientation properties of one file and apply it to another file through CONN?