Hi There,
I have some rest data, processed with CONN defaults. I thought the CONN outputs were in MNI space, and I do a lot of post-processing outside of CONN with MNI atlases.
However, when I run:
3dinfo -space -av_space -prefix *.HEAD *.nii*, 3dinfo reports the CONN outputs are in TLRC space.
The 3dinfo output, for example, are:
TLRC +tlrc NUC001_Concat_Preproc_REST1_REST2.nii (my CONN preprocessed resting state data)
TLRC +tlrc NUC001_MNI_Fused_T1w.nii (subj T1, warped to std space during CONN preprocessing. I labeled it MNI, now I'm not sure it is)
ORIG +orig NUC001_raw_Fused_T1w.nii (native T1)
MNI +tlrc NUC001_GM_Masked_REST_TS_ROIselected_Conn.nii (file from post-processing that needs to be in same space as my preprocessed rest data)
A few questions:
1) Is this a header issue, or are the CONN default outputs really in TLRC space?
2) Can I choose which std space CONN will warp to including MNI, TLRC or freesurfer average? I looked but didn't see where to set that option.
Thanks in advance for your help,
Sherri
I have some rest data, processed with CONN defaults. I thought the CONN outputs were in MNI space, and I do a lot of post-processing outside of CONN with MNI atlases.
However, when I run:
3dinfo -space -av_space -prefix *.HEAD *.nii*, 3dinfo reports the CONN outputs are in TLRC space.
The 3dinfo output, for example, are:
TLRC +tlrc NUC001_Concat_Preproc_REST1_REST2.nii (my CONN preprocessed resting state data)
TLRC +tlrc NUC001_MNI_Fused_T1w.nii (subj T1, warped to std space during CONN preprocessing. I labeled it MNI, now I'm not sure it is)
ORIG +orig NUC001_raw_Fused_T1w.nii (native T1)
MNI +tlrc NUC001_GM_Masked_REST_TS_ROIselected_Conn.nii (file from post-processing that needs to be in same space as my preprocessed rest data)
A few questions:
1) Is this a header issue, or are the CONN default outputs really in TLRC space?
2) Can I choose which std space CONN will warp to including MNI, TLRC or freesurfer average? I looked but didn't see where to set that option.
Thanks in advance for your help,
Sherri