ERROR: Subject 1 Session 1 first-level covariate QC_timeseries mismatched dimensions (0 rows, while functional data has 260 scans; the number of rows of a first-level covariate should equal the number of scans for this subject/session)

Hi 
I've been following the tutorials and I thought I had successfully finished the initial setup.

Preprocessing finished correctly; Output files imported.

However, when I checked the results I noticed that there is no data in the covariates 1st level QC timeseries or the scrubbing and yet there is in the realignment. There are also results in the covariates 2nd-level.

I can see that all the output files have been produced but then I also notice this message in the matlab window.

warning: unexpected number of samples in subject 1 session 1 covariate (expected 260, observed 0)
/Users/annabarnes/Documents/ImageData/NEST/rsFMRI/art_regression_timeseries_auNEST_001_rsfMRI.mat

Anyway I decided to press on and clicked Done but then I get this message.

Ready to run Setup pipeline
overwrite existing results (re-compute for all subjects/ROIs)
local processing (run on this computer)
CONN: RUNNING SETUP STEP
Step 1/7: Checking data completeness
spm @ /Users/annabarnes/Documents/MATLAB/spm12
conn @ /Users/annabarnes/Documents/MATLAB/conn
SOME ERRORS FOUND!: Please revise the Setup information
ERROR DESCRIPTION:

ERROR: Subject 1 Session 1 first-level covariate QC_timeseries mismatched dimensions (0 rows, while functional data has 260 scans; the number of rows of a first-level covariate should equal the number of scans for this subject/session)

So what have I done wrong? All my functional images and structural images etc look fine and all the realigned, smoothed and normalised images are there.  I've attached a screen shots