Some of the ROIs in my atlases are bilateral, such as MTG. I use fslmaths to threshold, and fslroi to extract the left and right areas to separate files. When I display them in fsleyes, they look find. When they are displayed in conn toolbox, they are shown on half the brain, either the left or right hemisphere, and on the appropriate side.
Also, the Reference point coordinates in conn don't match the MNI coordinates in FSLeyes.
Are these things something I should be concerned about?[code]fslmaths MTG_bilateral.nii.gz -thr 50 MTG_50[/code][code]fslroi MTG_50.nii.gz MTG_50_L 90 -1 0 -1 0 -1[/code]
[img]https://i.imgur.com/hXcwNp7.png[/img]
[img]https://i.imgur.com/8hjc4w9.png[/img]
Also, the Reference point coordinates in conn don't match the MNI coordinates in FSLeyes.
Are these things something I should be concerned about?[code]fslmaths MTG_bilateral.nii.gz -thr 50 MTG_50[/code][code]fslroi MTG_50.nii.gz MTG_50_L 90 -1 0 -1 0 -1[/code]
[img]https://i.imgur.com/hXcwNp7.png[/img]
[img]https://i.imgur.com/8hjc4w9.png[/img]