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Using the BETA_denoising_Subject*.nii for activity differences in another tool

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Hi Alfonso,
I would like to examine the activity differences between two conditions using GLM Flex (http://mrtools.mgh.harvard.edu/index.php?title=GLM_Flex_Fast2). For that I would need the preprocessed images. As I read on the forum, I created the BETA_denoising_Subject*.nii files by clicking on the relevant button ('Create confound-corrected time series' option in Setup.Options CONN). When I look into this nifti, it consists out of 60 sessions (constant term, realignment, fixation, each condition). How can I create subject-specific nifti files for just the conditions, so that I can compare activity between two conditions across the subjects it in GLM_Flex_Fast2?

Many thanks!
Heidi

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